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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62433935_62438013_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62433935 - 62438013
Intron Length:
4079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGCTCG
5'SS Class:
major
3'SS Sequence:
TTTACTTACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
ATTTACTTACTC
Flanking Amino Acid:
MDPFTEKLLERTRARR
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
59.5
42.1
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
78.6
0.64
0.9
77.6
35.6
Minor 5ss
37.6
-1.4
3.1
47.7
48
Minor BPS
61.7
0.35
1.8
73.71
37.2

Associated Gene:

Gene:
ANLN
Ensembl Gene ID:
ENSAPLG00000009197
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009624
62433917 - 62461179
27263
ENSAPLT00000034461
62433917 - 62459448
25532
ENSAPLT00000034044
62433917 - 62461179
27263
ENSAPLT00000029087
62433917 - 62459448
25532