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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62438168_62438506_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62438168 - 62438506
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
CCCACCTATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTGCTTGAATA
Flanking Amino Acid:
GNQASFPGEEVKPNTKPSPS
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
67.6
0.4
0.9
60.4
34.3
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
65.7
0.49
1.5
75.76
36

Associated Gene:

Gene:
ANLN
Ensembl Gene ID:
ENSAPLG00000009197
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034461
62433917 - 62459448
25532
ENSAPLT00000034044
62433917 - 62461179
27263
ENSAPLT00000029087
62433917 - 62459448
25532
ENSAPLT00000009624
62433917 - 62461179
27263