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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62440463_62441405_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62440463 - 62441405
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TTTCTTTTAAGC
Flanking Amino Acid:
LEPKDKPTTPGGTGIKPFLE
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
76.9
0.61
0.9
70.1
35.8
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
64.9
0.45
1.6
74.92
35.8

Associated Gene:

Gene:
ANLN
Ensembl Gene ID:
ENSAPLG00000009197
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034461
62433917 - 62459448
25532
ENSAPLT00000034044
62433917 - 62461179
27263
ENSAPLT00000029087
62433917 - 62459448
25532
ENSAPLT00000009624
62433917 - 62461179
27263