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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6244088_6245373_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6244088 - 6245373
Intron Length:
1286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTTTCTAAGCA
Flanking Amino Acid:
AAITGSRAYERFTGNQIAKI
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
86.3
0.82
0.7
84.9
29.1
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
56.4
0.2
1.9
71.59
40.7

Associated Gene:

Gene:
XYLB
Ensembl Gene ID:
ENSAPLG00000012716
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018671
6169858 - 6252219
82362
ENSAPLT00000013278
6169858 - 6251107
81250
ENSAPLT00000026867
6169858 - 6247684
77827