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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62441600_62441724_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62441600 - 62441724
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACCTACCC
Flanking Amino Acid:
TASLALQLKQERERELACIR
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
77.2
37.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74
0.54
0.9
73.7
36.7
Minor 5ss
44
-0.7
3.1
65.1
46.1
Minor BPS
48.7
-0.1
2.1
70.16
40.7

Associated Gene:

Gene:
ANLN
Ensembl Gene ID:
ENSAPLG00000009197
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034461
62433917 - 62459448
25532
ENSAPLT00000034044
62433917 - 62461179
27263
ENSAPLT00000029087
62433917 - 62459448
25532
ENSAPLT00000009624
62433917 - 62461179
27263