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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62442486_62443976_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62442486 - 62443976
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CATCCGTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATTTCTTTATAC
Flanking Amino Acid:
PPNSPSVESSDDVCEVEMSV
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
76.8
0.6
0.9
72.6
37.2
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
63.3
0.4
1.7
73.99
36.6

Associated Gene:

Gene:
ANLN
Ensembl Gene ID:
ENSAPLG00000009197
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034044
62433917 - 62461179
27263