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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62444919_62445232_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62444919 - 62445232
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTAAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
CTTGTTTTAAAA
Flanking Amino Acid:
STSEDRNLLYSVDAYRSQRL
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
78.8
29.6
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
68.9
0.43
1.1
71.4
37.5
Minor 5ss
32.9
-2
2.9
40.3
45.4
Minor BPS
59.4
0.29
1.5
67.32
39.7

Associated Gene:

Gene:
ANLN
Ensembl Gene ID:
ENSAPLG00000009197
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034044
62433917 - 62461179
27263
ENSAPLT00000029087
62433917 - 62459448
25532
ENSAPLT00000009624
62433917 - 62461179
27263
ENSAPLT00000034461
62433917 - 62459448
25532