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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62446143_62446455_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62446143 - 62446455
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
TTTCTCTACACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATGAATT
Flanking Amino Acid:
AEAERLLLFATEKRTALLEE
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
81.6
33.2
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
80.8
0.69
0.8
76.7
30.9
Minor 5ss
46.5
-0.4
3.1
66.5
39
Minor BPS
61.3
0.43
1.7
78.36
37.2

Associated Gene:

Gene:
ANLN
Ensembl Gene ID:
ENSAPLG00000009197
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034044
62433917 - 62461179
27263
ENSAPLT00000029087
62433917 - 62459448
25532
ENSAPLT00000009624
62433917 - 62461179
27263
ENSAPLT00000034461
62433917 - 62459448
25532