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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62449839_62451258_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62449839 - 62451258
Intron Length:
1420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
AATGCATTCATT
Flanking Amino Acid:
DKRKKANKSKVITPKRLLTS
Intron Amino Acid Position:
883

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.8
35.6
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
94.9
1.01
0.5
91.6
19.6
Minor 5ss
31.4
-2.1
3.2
40.8
45.4
Minor BPS
47.9
-0
2.1
68.61
42.4

Associated Gene:

Gene:
ANLN
Ensembl Gene ID:
ENSAPLG00000009197
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009624
62433917 - 62461179
27263
ENSAPLT00000034461
62433917 - 62459448
25532
ENSAPLT00000034044
62433917 - 62461179
27263
ENSAPLT00000029087
62433917 - 62459448
25532