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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62452791_62456365_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62452791 - 62456365
Intron Length:
3575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
TACTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAAAT
U12 Branch Point Sequence:
ATTGTTTTACTT
Flanking Amino Acid:
VGNAKFALEKVPVLSPLEGH
Intron Amino Acid Position:
941

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
68.5
0.46
1
73.3
28.9
Major PPT
88.6
0.87
0.7
84.2
30.3
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
55.1
0.24
1.7
72.81
39.3

Associated Gene:

Gene:
ANLN
Ensembl Gene ID:
ENSAPLG00000009197
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034461
62433917 - 62459448
25532