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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62456453_62457958_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62456453 - 62457958
Intron Length:
1506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
DSSVEEKGFLTMFEDVSGFG
Intron Amino Acid Position:
988

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
ANLN
Ensembl Gene ID:
ENSAPLG00000009197
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034044
62433917 - 62461179
27263
ENSAPLT00000029087
62433917 - 62459448
25532
ENSAPLT00000009624
62433917 - 62461179
27263
ENSAPLT00000034461
62433917 - 62459448
25532