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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62460666_62461055_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62460666 - 62461055
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AGGCATCTAACT
Flanking Amino Acid:
SQCRDTLCVTKNWLSADTKE
Intron Amino Acid Position:
1081

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.3
34.5
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
83
0.74
0.7
81.1
31
Minor 5ss
28.3
-2.5
3.1
31.3
36.7
Minor BPS
46.9
-0.1
1.8
62.7
40.8

Associated Gene:

Gene:
ANLN
Ensembl Gene ID:
ENSAPLG00000009197
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034044
62433917 - 62461179
27263
ENSAPLT00000009624
62433917 - 62461179
27263