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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62466673_62472198_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62466673 - 62472198
Intron Length:
5526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATCC
5'SS Class:
strong_major
3'SS Sequence:
GTGCTGTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTGTCTCATAT
Flanking Amino Acid:
EPVDGFHPSQIAAALGTSIT
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
71.9
32.2
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
71
0.47
1
64
41.6
Minor 5ss
38.6
-1.3
3.1
51.6
45.1
Minor BPS
48.5
-0
2
72.96
43.9

Associated Gene:

Gene:
AOAH
Ensembl Gene ID:
ENSAPLG00000008623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018455
62466544 - 62539576
73033
ENSAPLT00000009046
62466544 - 62540211
73668
ENSAPLT00000033895
62466544 - 62528325
61782
ENSAPLT00000021042
62466544 - 62539576
73033