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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62466673_62475497_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62466673 - 62475497
Intron Length:
8825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GTGCTGTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTGTCTCATAT
Flanking Amino Acid:
VFYMDFPLRQNCCSPGNKHY
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
71
0.47
1
64
41.6
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
48.5
-0
2
72.96
43.9

Associated Gene:

Gene:
AOAH
Ensembl Gene ID:
ENSAPLG00000008623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026098
62466584 - 62539576
72993