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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6246980_6247568_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6246980 - 6247568
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TACTTTCCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAA
U12 Branch Point Sequence:
GTTTCTGTACTT
Flanking Amino Acid:
ARQPQLTQVKQHGSVYWKKG
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66.4
45.1
Major BPS
55.5
0.14
1.3
66.7
39.7
Major PPT
78.6
0.64
0.8
73.4
31.3
Minor 5ss
31.5
-2.1
3.1
39.9
45.7
Minor BPS
50.2
0.08
2.2
75.88
41.7

Associated Gene:

Gene:
XYLB
Ensembl Gene ID:
ENSAPLG00000012716
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026867
6169858 - 6247684
77827