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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6246980_6248468_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6246980 - 6248468
Intron Length:
1489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TACTTTCCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAA
U12 Branch Point Sequence:
GTTTCTGTACTT
Flanking Amino Acid:
QVRALSGAGQQHGSVYWKKG
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
85.3
27
Major BPS
55.5
0.14
1.3
66.7
39.7
Major PPT
78.6
0.64
0.8
73.4
31.3
Minor 5ss
40.1
-1.1
2.7
50.2
46
Minor BPS
50.2
0.08
2.2
75.88
41.7

Associated Gene:

Gene:
XYLB
Ensembl Gene ID:
ENSAPLG00000012716
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045187
6169858 - 6252219
82362
ENSAPLT00000018671
6169858 - 6252219
82362
ENSAPLT00000013278
6169858 - 6251107
81250