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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62472276_62475497_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62472276 - 62475497
Intron Length:
3222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GTGTGCTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
GGTGCTGTAACC
Flanking Amino Acid:
VFYMDFPLRQTAEEWRKMGG
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
66.6
0.37
1.1
61.7
44.4
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
49.7
-0
2.1
63.4
42.3

Associated Gene:

Gene:
AOAH
Ensembl Gene ID:
ENSAPLG00000008623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018455
62466544 - 62539576
73033
ENSAPLT00000009046
62466544 - 62540211
73668
ENSAPLT00000033895
62466544 - 62528325
61782
ENSAPLT00000021042
62466544 - 62539576
73033