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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62480657_62485998_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62480657 - 62485998
Intron Length:
5342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAC
U12 Branch Point Sequence:
CCTGACACAATG
Flanking Amino Acid:
YATIGNDVCNGNHDTLAHMT
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.1
38.8
Major BPS
60.1
0.25
1
51
35.6
Major PPT
85.4
0.8
0.7
80.4
24.8
Minor 5ss
38.9
-1.2
3.3
48.7
47
Minor BPS
39.7
-0.9
2
41.03
43.6

Associated Gene:

Gene:
AOAH
Ensembl Gene ID:
ENSAPLG00000008623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026098
62466584 - 62539576
72993
ENSAPLT00000021042
62466544 - 62539576
73033
ENSAPLT00000018455
62466544 - 62539576
73033
ENSAPLT00000009046
62466544 - 62540211
73668
ENSAPLT00000033895
62466544 - 62528325
61782