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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6248550_6250038_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6248550 - 6250038
Intron Length:
1489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCATTCTTGATT
Flanking Amino Acid:
VTSPVLMWVKALDMILEKMK
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
81
33.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
85.6
0.8
0.7
81.6
30.5
Minor 5ss
36
-1.6
3.2
48.9
46.9
Minor BPS
70.9
0.74
1.1
78.8
37.9

Associated Gene:

Gene:
XYLB
Ensembl Gene ID:
ENSAPLG00000012716
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045187
6169858 - 6252219
82362
ENSAPLT00000018671
6169858 - 6252219
82362
ENSAPLT00000013278
6169858 - 6251107
81250