Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62487082_62492379_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62487082 - 62492379

Intron Length:

5298

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TGCATGTGATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTTAT

U12 Branch Point Sequence:

TTCCTCTTATTC

Flanking Amino Acid:

HRDLQNISQNGGSSRNLLNL

Intron Amino Acid Position:

380

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.92

0.8

26.1

Major BPS

79.1

0.72

69.3

38.4

Major PPT

60.2

0.23

1.1

58.4

46.1

Minor 5ss

39.7

-1.2

2.8

45.9

43.7

Minor BPS

58.2

0.24

1.6

66.92

39.3

Associated Gene:

Gene:

AOAH

Ensembl Gene ID:

ENSAPLG00000008623

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021042

62466544 - 62539576

73033

ENSAPLT00000018455

62466544 - 62539576

73033

ENSAPLT00000009046

62466544 - 62540211

73668

ENSAPLT00000033895

62466544 - 62528325

61782

ENSAPLT00000026098

62466584 - 62539576

72993