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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62492463_62494823_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62492463 - 62494823
Intron Length:
2361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
CAATTTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTTTTCTCAATT
Flanking Amino Acid:
EITGFLNSTIGGWTDSLYLR
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
71.1
37.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.4
0.62
0.9
74.2
39.7
Minor 5ss
42.7
-0.8
2.9
47.1
48.3
Minor BPS
70.8
0.73
1.5
84.72
35.8

Associated Gene:

Gene:
AOAH
Ensembl Gene ID:
ENSAPLG00000008623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021042
62466544 - 62539576
73033
ENSAPLT00000018455
62466544 - 62539576
73033
ENSAPLT00000033895
62466544 - 62528325
61782
ENSAPLT00000009046
62466544 - 62540211
73668
ENSAPLT00000026098
62466584 - 62539576
72993