Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_624941_626406_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

624941 - 626406

Intron Length:

1466

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCGTG

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTGTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGAGAT

U12 Branch Point Sequence:

TAACCCTGTATT

Flanking Amino Acid:

FTEDLTFVGKGKLSFANGFI

Intron Amino Acid Position:

552

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

0.9

72.2

39.5

Major BPS

55.2

0.13

1.2

52.5

43.3

Major PPT

84.9

0.78

0.8

80.1

31.9

Minor 5ss

34.5

-1.8

3.4

45.9

49.3

Minor BPS

49.8

0.06

1.8

68.87

41.6

Associated Gene:

Gene:

ALS2CL

Ensembl Gene ID:

ENSAPLG00000005280

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019967

616350 - 658098

41749

ENSAPLT00000005504

616350 - 658098

41749

ENSAPLT00000038866

616350 - 640574

24225

ENSAPLT00000022344

616350 - 641213

24864