About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62494916_62502318_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62494916 - 62502318
Intron Length:
7403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGATTTAAAATT
Flanking Amino Acid:
EWMTVTQMSAKSFANLPMAF
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
0.9
77.2
32.9
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
30.2
-2.3
3
41.3
44.8
Minor BPS
47.1
-0.1
1.8
65.65
39.4

Associated Gene:

Gene:
AOAH
Ensembl Gene ID:
ENSAPLG00000008623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021042
62466544 - 62539576
73033
ENSAPLT00000018455
62466544 - 62539576
73033
ENSAPLT00000009046
62466544 - 62540211
73668
ENSAPLT00000033895
62466544 - 62528325
61782
ENSAPLT00000026098
62466584 - 62539576
72993