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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6250109_6250702_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6250109 - 6250702
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCACC
5'SS Class:
major
3'SS Sequence:
CATTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
CTAAATTTACCA
Flanking Amino Acid:
WTWQFLFGTQKTQGGAYVHS
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
72.6
37.3
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
81.8
0.72
0.7
77.6
30.8
Minor 5ss
42.4
-0.8
2.8
53.9
36.9
Minor BPS
47.5
-0.1
1.8
57.59
41.8

Associated Gene:

Gene:
XYLB
Ensembl Gene ID:
ENSAPLG00000012716
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013278
6169858 - 6251107
81250