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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62502414_62503520_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62502414 - 62503520
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATCTT
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATGCCATTAATC
Flanking Amino Acid:
GIPYEEKFCKGADSRGVVLL
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
80.2
34.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
67.9
0.4
1
66.9
43.8
Minor 5ss
34.1
-1.8
3.2
49.5
46.7
Minor BPS
60.7
0.31
1.6
67.71
37.6

Associated Gene:

Gene:
AOAH
Ensembl Gene ID:
ENSAPLG00000008623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021042
62466544 - 62539576
73033
ENSAPLT00000018455
62466544 - 62539576
73033
ENSAPLT00000009046
62466544 - 62540211
73668
ENSAPLT00000033895
62466544 - 62528325
61782
ENSAPLT00000026098
62466584 - 62539576
72993