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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62505303_62506452_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62505303 - 62506452
Intron Length:
1150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTACGTATA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
CATCTGTTAACA
Flanking Amino Acid:
LLANLCEKIKYVIRNKLPFE
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
73.7
36.8
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
40.1
-1.1
3
52.2
39.9
Minor BPS
52.8
0.08
2.1
65.38
41

Associated Gene:

Gene:
AOAH
Ensembl Gene ID:
ENSAPLG00000008623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021042
62466544 - 62539576
73033
ENSAPLT00000018455
62466544 - 62539576
73033
ENSAPLT00000009046
62466544 - 62540211
73668
ENSAPLT00000033895
62466544 - 62528325
61782
ENSAPLT00000026098
62466584 - 62539576
72993