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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62506524_62511812_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62506524 - 62511812
Intron Length:
5289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TCATCTTTTATC
Flanking Amino Acid:
KRILKTSKDLKSTTRFSNLC
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
86.3
28.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
78.7
0.65
0.7
69.6
31.2
Minor 5ss
39.6
-1.2
3.2
55.5
42.8
Minor BPS
60.3
0.3
1.6
66.59
39.6

Associated Gene:

Gene:
AOAH
Ensembl Gene ID:
ENSAPLG00000008623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026098
62466584 - 62539576
72993
ENSAPLT00000021042
62466544 - 62539576
73033
ENSAPLT00000018455
62466544 - 62539576
73033
ENSAPLT00000009046
62466544 - 62540211
73668
ENSAPLT00000033895
62466544 - 62528325
61782