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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6250740_6251024_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6250740 - 6251024
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGAACTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TGTAAATTAACC
Flanking Amino Acid:
FILIKIFQNLNFWTWQFLFG
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
82.3
31.4
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
72.7
0.51
1
67.9
42.5
Minor 5ss
44.4
-0.6
3.4
64.7
41
Minor BPS
57
0.2
1.8
70.91
39.3

Associated Gene:

Gene:
XYLB
Ensembl Gene ID:
ENSAPLG00000012716
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013278
6169858 - 6251107
81250