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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6251108_6252174_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6251108 - 6252174
Intron Length:
1067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGCGG
5'SS Class:
major
3'SS Sequence:
TTATTTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTTTGTTAACA
Flanking Amino Acid:
FLGWDFSTQQLKVIAIDEHL
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.3
1.3
46.3
49
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
84.5
0.78
0.8
78
36.2
Minor 5ss
34.6
-1.7
3.5
47.8
47.7
Minor BPS
72.4
0.7
2
86.69
32.1

Associated Gene:

Gene:
XYLB
Ensembl Gene ID:
ENSAPLG00000012716
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045187
6169858 - 6252219
82362
ENSAPLT00000018671
6169858 - 6252219
82362