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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62521230_62538917_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62521230 - 62538917
Intron Length:
17688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GTTACTTTAAAA
Flanking Amino Acid:
SRLYKGHTCVEKLQGFCYIL
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
74.8
41.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
80.8
0.69
0.9
73.7
41.5
Minor 5ss
45.9
-0.4
2.5
60.4
44.2
Minor BPS
68.1
0.56
1.4
74.46
36.5

Associated Gene:

Gene:
AOAH
Ensembl Gene ID:
ENSAPLG00000008623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018455
62466544 - 62539576
73033