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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62539073_62540116_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62539073 - 62540116
Intron Length:
1044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTTGTTTT
5'SS Class:
major
3'SS Sequence:
TCTCTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTTTTTCTCT
Flanking Amino Acid:
TWCLPSAASFWMRASRQTFL
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.2
74.4
36.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
81
0.7
0.7
80.8
24.4
Minor 5ss
48.7
-0.1
2.4
65.1
40.4
Minor BPS
45.5
-0.2
3.6
82.72
39.3

Associated Gene:

Gene:
AOAH
Ensembl Gene ID:
ENSAPLG00000008623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009046
62466544 - 62540211
73668