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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62586016_62587141_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
62586016 - 62587141
Intron Length:
1126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAACTGGC
5'SS Class:
weak_major
3'SS Sequence:
TTGTCATCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCATCCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.3
54.8
43
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
75.6
0.58
0.9
69.5
35.8
Minor 5ss
41.5
-0.9
3.3
61.9
42.9
Minor BPS
48.6
-0.1
2.2
68.88
43.3

Associated Gene:

Gene:
ELMO1
Ensembl Gene ID:
ENSAPLG00000009118
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009501
62558245 - 62587540
29296