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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62727417_62745033_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62727417 - 62745033
Intron Length:
17617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
ATCTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATCTTGTTATCT
Flanking Amino Acid:
TRDYKKLGFINHVNPAMDFT
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
81.7
31.1
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
88.9
0.87
0.7
84.4
29.7
Minor 5ss
38.8
-1.3
3
57.3
41.2
Minor BPS
49.7
0.06
2.3
73.32
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007125
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007402
62727264 - 62771453
44190