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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62746091_62747763_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62746091 - 62747763
Intron Length:
1673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTTCACTGGAGT
Flanking Amino Acid:
QKQLRSIILTHVIRAQRAIN
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
92.1
0.95
0.6
87.8
22.1
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
46.5
-0.1
2
67.71
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007125
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007402
62727264 - 62771453
44190