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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62747815_62759753_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62747815 - 62759753
Intron Length:
11939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTTCTCTGATT
Flanking Amino Acid:
FLKAPDDKRQEMANILAQKQ
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
79
0.72
1
69
38.9
Major PPT
74.5
0.55
0.9
73.8
35.9
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
67.9
0.65
1.6
87.59
31.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007125
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007402
62727264 - 62771453
44190