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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6275336_6275425_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6275336 - 6275425
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTGTAT
U12 Branch Point Sequence:
ATTTTGCCAGTT
Flanking Amino Acid:
ENKEAGEEMKELAQKYSSKL
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
45.5
-0.2
1.6
43.1
49.2
Major PPT
71.5
0.48
0.8
69.5
36.8
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
39
-0.7
2.4
62.84
41.7

Associated Gene:

Gene:
NUB1
Ensembl Gene ID:
ENSAPLG00000013255
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013835
6275218 - 6287873
12656