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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62759833_62760687_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62759833 - 62760687
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTTTCCAAACA
Flanking Amino Acid:
TIGQLIPHLQGTDQEIQTYT
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.7
34.4
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
78.1
0.63
0.9
74.9
33.8
Minor 5ss
31.4
-2.1
3.2
35.2
41.4
Minor BPS
60.6
0.33
2
79.54
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007125
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007402
62727264 - 62771453
44190