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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62760840_62766429_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
62760840 - 62766429
Intron Length:
5590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTAATTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AATGTGTTAATT
Flanking Amino Acid:
DTFSVAFIKKIASYVNKFAS
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
76.5
0.6
0.9
70.6
39.8
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
50.9
0.11
2.1
70.6
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007125
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007402
62727264 - 62771453
44190