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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6277671_6278241_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6277671 - 6278241
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
ATTTATTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTATATTAATG
Flanking Amino Acid:
LFITGKELRSQIAQEHALKE
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.6
34.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.2
0.72
0.8
76.6
36.6
Minor 5ss
38.5
-1.3
3.3
54.7
43.6
Minor BPS
61.3
0.22
1.7
68.95
38.6

Associated Gene:

Gene:
NUB1
Ensembl Gene ID:
ENSAPLG00000013255
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013835
6275218 - 6287873
12656