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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6278313_6279162_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6278313 - 6279162
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACGTATC
5'SS Class:
major
3'SS Sequence:
CTTTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTCATC
Flanking Amino Acid:
IIINKKQLDLGRTLEDQGVT
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
76.4
39.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
38.8
-1.3
3
45.8
42.6
Minor BPS
58
0.23
2
73.94
36.9

Associated Gene:

Gene:
NUB1
Ensembl Gene ID:
ENSAPLG00000013255
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013835
6275218 - 6287873
12656