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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_628102_628397_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
628102 - 628397
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGTG
5'SS Class:
strong_major
3'SS Sequence:
TATTGCATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCTATTGCATT
Flanking Amino Acid:
NGYGVWEDKDRGERYIGTWL
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
70.2
40.4
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
72.8
0.51
0.9
63.7
42.4
Minor 5ss
32.2
-2
3.7
45.9
49.3
Minor BPS
46.5
-0.1
2
69.16
42.4

Associated Gene:

Gene:
ALS2CL
Ensembl Gene ID:
ENSAPLG00000005280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022344
616350 - 641213
24864
ENSAPLT00000019967
616350 - 658098
41749
ENSAPLT00000005504
616350 - 658098
41749
ENSAPLT00000038866
616350 - 640574
24225