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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6282396_6283266_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6282396 - 6283266
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTTCCCCCACCC
Flanking Amino Acid:
PYLLDADKHFCECSTELLNT
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
48.1
-0.1
2.1
69.49
41.6

Associated Gene:

Gene:
NUB1
Ensembl Gene ID:
ENSAPLG00000013255
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013835
6275218 - 6287873
12656