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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6283454_6283809_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6283454 - 6283809
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGCTGG
5'SS Class:
weak_major
3'SS Sequence:
AACAATTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
CTTTGCTTAACA
Flanking Amino Acid:
ENHERLIDIKGSYGREKVLF
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
56
43.9
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
63.7
0.31
0.9
59.3
41.6
Minor 5ss
53.8
0.13
2.4
63.9
42.1
Minor BPS
74.6
0.77
1.8
83.03
38.2

Associated Gene:

Gene:
NUB1
Ensembl Gene ID:
ENSAPLG00000013255
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013835
6275218 - 6287873
12656