About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6283918_6284112_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6283918 - 6284112
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
CATTTACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAC
U12 Branch Point Sequence:
TTCCATTTACCT
Flanking Amino Acid:
EKEAAEYIQKASHLYDELYI
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
66.4
0.41
1
59
37.6
Major PPT
77.7
0.62
0.9
70.8
34.6
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
53.6
0.19
1.8
73.99
42.9

Associated Gene:

Gene:
NUB1
Ensembl Gene ID:
ENSAPLG00000013255
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013835
6275218 - 6287873
12656