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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6284266_6285182_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6284266 - 6285182
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
AGCTTTGTAATG
Flanking Amino Acid:
AANLITNRREEKAQIRREER
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
83.2
0.75
0.9
77.3
37
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
46.2
-0.4
2
49.04
39.8

Associated Gene:

Gene:
NUB1
Ensembl Gene ID:
ENSAPLG00000013255
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013835
6275218 - 6287873
12656