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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6285330_6285566_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6285330 - 6285566
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTACTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTATTCTAACC
Flanking Amino Acid:
AQGNLDQAFKFILDNPELLL
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79.8
0.67
0.8
75.4
34
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
55.1
0.14
1.7
67
38.8

Associated Gene:

Gene:
NUB1
Ensembl Gene ID:
ENSAPLG00000013255
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013835
6275218 - 6287873
12656