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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_628557_630207_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
628557 - 630207
Intron Length:
1651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
CTCTCTGTATCT
Flanking Amino Acid:
VGDFKEGLEHGYGNDMVYKG
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
66.3
0.41
1
61
37.5
Major PPT
83.2
0.75
0.7
77.4
24.6
Minor 5ss
43.4
-0.7
3.2
57.4
46.8
Minor BPS
48.6
-0
2.3
70.73
46.8

Associated Gene:

Gene:
ALS2CL
Ensembl Gene ID:
ENSAPLG00000005280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019967
616350 - 658098
41749