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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62885071_62886766_R

Intron Information:

Intron Rank:
130470
Intron Class:
major
Intron Phase:
Intron Coordinates:
62885071 - 62886766
Intron Length:
1696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCAGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCTTCTGTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
76.7
0.6
0.9
75.1
34.6
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
59.2
0.37
2.1
80.63
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017458
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028774
62885026 - 62888890
3865