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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62887689_62888742_R

Intron Information:

Intron Rank:
130472
Intron Class:
major
Intron Phase:
Intron Coordinates:
62887689 - 62888742
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TTCTTTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACACAA
U12 Branch Point Sequence:
TTCTTTGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
70.1
35.6
Major BPS
60.7
0.27
1
67.2
29.6
Major PPT
79.8
0.67
0.9
76.6
36.3
Minor 5ss
33.5
-1.9
2.7
44.7
42.7
Minor BPS
59.6
0.3
2
73.92
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017458
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028774
62885026 - 62888890
3865
ENSAPLT00000042549
62881878 - 62888890
7013