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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62905209_62906919_R

Intron Information:

Intron Rank:
153539
Intron Class:
major
Intron Phase:
Intron Coordinates:
62905209 - 62906919
Intron Length:
1711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTATT
5'SS Class:
major
3'SS Sequence:
TTTTTGTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTGTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
83.7
34.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
88
0.85
0.7
83.5
31.6
Minor 5ss
40.3
-1.1
3.2
59.8
44.7
Minor BPS
55.5
0.17
2.4
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030084
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039317
62904045 - 62907383
3339